1987, Swift and Taylor 1974, Sunda and Huntsman 1992, 2005). Great Lakes region nonindigenous occurrences, the earliest and latest observations in each state/province, and the tally and names of HUCs with observations†. Massive development of a little known diatom Thalassiosira pseudonana in the Volga Russian-SFSR USSR. Bolger, A.M.; Lohse, M.; Usadel, B. Trimmomatic: A flexible trimmer for Illumina sequence data. Langmead, B.; Salzberg, S.L. The authors declare no conflict of interest. Effect of CO2 supply and demand on zinc uptake and growth limitation in a coastal diatom. Thalassiosira pseudonana is also used as a model organism for silica biomineralization because its entire gene sequenced has been published. T. pseudonana was selected for this study because it is a model for diatom physiology studies, belongs to a genus widely distributed throughout the world's oceans, and has a relatively small genome at 34 mega base pairs. Please note that many of the page functionalities won't work as expected without javascript enabled. Chemical There are no known chemical control methods for this species. In 1958, Guillard isolated three diatom clones from an estuarine habitat (3-H), slope water (7-15), and open ocean (13-1). ChemBioChem 9: 1187-1194. 2011-09-25 07:09:59 Bengt Karlson - Added media: Thalassiosira rotula_2.gif Nordic Microalgae is developed and operated by the Swedish Meterological and Hydrological Institute (SMHI) with funding from the Swedish LifeWatch project . 1995, Raman and Prakash 1989, Weckstrom and Juggins 2006). 1973. ; Meaney, R.S. The first step in the silicification process in diatoms is the transport of silicic acid from the environment, across the plasma membrane and against a concentration gradient, into the cell. Ferguson, R.L., A. Collier, and D.A. 1993. Author to whom correspondence should be addressed. Limnology and Oceanography 37(1):25-40. Chesapeake Science 17(3):1 48-158. Goldman, J.C., and J.H. 1997, Miao and Wang 2006, Price et al. Tesson, B.; Lerch, S.J.L. ; Huber, W. HTSeq-A Python framework to work with high-throughput sequencing data. Guillard, R.R.L., P. Kilharn, and T.A. Anders, S.; Pyl, P.T. ; Li, D.W.; Yang, W.D. Mitochondria, for example, are responsible for harvesting sugar to create energy for the cell. Journal of Phycology 9(3): 233-237. * HUCs are not listed for areas where the observation(s) cannot be approximated to a HUC (e.g. ; Smith, S.R. Temperature-influenced species composition in mass cultures of marine phytoplankton. Sumper, M., and E. Brunner. ; Mendez, M.J. An exogenous chloroplast genome for complex sequence manipulation in algae. This work expands our understanding of potential hurdles that can be encountered when cloning and propagating synthetic organelle genomes in host organisms. Response of two zooplankton grazers to an ichthyotoxic estuarine dinoflagellate. 1978. In previous work, we demonstrated a method to make copies of an alga mitochondrial genome using yeast and bacteria. 1992. (For information on the genome project click here.) British Phycological Journal 17(2): 233. ; resources, G.B.G., D.R.E., and B.J.K. Ectocarpus siliculosus (Cock et al., 2010) in Phaeophyta and Aureococcus anophagefferens (Gobler et al., 2011) in Pelagophytes have also been sequenced. Influence of salinity on seasonal germination of resting stages and composition of microplankton on the Swedish west coast. It typically exhibits a ring of fultoportulae around the edge of the valve face, costae that may run from the middle of the valve face to its edges, and one labiate process. Medlin, J.Lewis, and K.J. You seem to have javascript disabled. (1962) The morphology of Thalassiosira fluviatilis from the polluted inner Oslofjord Nytt Mag. ; Liu, J.S. Pair-wise comparisons were made using a Student’s, Sequences obtained for the pTP-PCR plasmids were aligned to reference sequences (. Examination of diatom type material Nitzschia delicatissima, Thalassiosira minuscula, and Cyclotella nana. ; Denisova, E.A. ; Wolff, K.L. Archiv für Hydrobiologie 92(3): 287-305. It is capable of quickly adapting to changes in irradiance by adjusting cell volume (Thompson et al. Price, N.M., P.A. Hernandez-Becerril, and M.E. ; Bowler, C.; Green, B.R. The identity of Thalassiosira pseudonana The combination of a relatively nondescript morphology and a series of three name changes over the years [26-29] has led to some uncertainty about the identity of T. pseu-donana (Additional file 3). Areolae are fine and details of their structure are not visible with the light microscope. Algae are attractive organisms for biotechnology applications such as the production of biofuels, medicines, and other high-value compounds due to their genetic diversity, varied physical characteristics, and metabolic processes. McQuoid (2005) reported growth of T. pseudonana after 2 years in storage, indicating the presence of a dormant state that seems to be triggered by temperature and light cues. MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. Creating synthetic organelle genomes can open the door to a wide range of applications, such as improving crop yields, treating mitochondrial diseases, or manufacturing high-value chemicals in an environmentally sustainable way. Conceptualization, B.J.K. Rapid method for generating designer algal mitochondrial genomes. Swift D.G., and W.R. Taylor. In T. pseudonana, distinct silica morphologies were observed during formation of different cell wall substructures, and three different scales of structural organization were identified. The morphology of the Guillard clones 3-H, 7-15 and 13-1 clones. ; Karas, B.J. ; Zhu, C.C. Kiss, K.T. These clones were considered for years to be different forms of, Ake-Castillo, J.A., D.U. † Populations may not be currently present. Journal of Experimental Marine Biology and Ecology 67: 199-220. ; Carrera, W.; Moodie, M.; Algire, M.A. Limnology and Oceanography 51(2): 925-935. One of the challenges in the emerging field of synthetic biology is engineering organelle genomes. Between 4.1 and 4.9% of the Zn from all types of nanoparticles dissolved within 72 h and was neither concentration dependent nor morphology dependent. Yoon, Y.G. 1986. Targeted drug delivery using genetically engineered diatom biosilica. Mills, E.L., J.H. Disclaimer: ITIS taxonomy is based on the latest scientific consensus available, and is provided as a general reference source for interested parties. Designer diatom episomes delivered by bacterial conjugation. Journal of Great Lakes Research 19(1): 1-54. Growth can be limited by changes in concentrations of vitamin B-12, silicon, selenium, zinc, nitrogen, phosphorus, or other vitamins (Guillard et al. 143-152 in D. B. Baker, W.B. Hasle, G.R. ; project administration, B.J.K. Gibson, D.G. Chloroplast genomes of the diatoms. ; Lant, J.T. Garland. 1981. Thalassiosira pseudonana is a marine centric diatom. This dormant state could give T. pseudonana a competitive advantage over native species, but this has not been specifically researched. Feedback interactions between zinc and phytoplankton in seawater. Mallin, M.A., J.M. There is little or no evidence to support that Thalassiosira pseudonana has significant socio-economic impacts in the Great Lakes. The life cycle of diatoms is shown here: This diatom can occur singly or in chains up to 6 cells long. Gupta, M.; Hoo, B. Genetic variability and differentiation in the temperature niche component of the diatom Thalassiosira pseudonana. KISS, K. T., l986: Species of the Thalassiosiraceae in the Budapest section of the Danube. Beyond pUC: Vectors for cloning unstable DNA. Re-examination and assessment of the morphological traits of the diatom genus Thalassiosira Cleve, a case study of Thalassiosira allenii Takano: Guo Ya-Qiong, Wu Gui-Yi, Li Yang: Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, College of Life Science, South China Normal University, Guangzhou 510631, China This research was funded by Natural Sciences and Engineering Research Council of Canada (NSERC), grant number: RGPIN-2018-06172. Occurrence of Thalassiosira pseudonana new record Bacillariophyceae in some rivers of Hungary. Cloning whole bacterial genomes in yeast. Iheringia Serie Botanica 31: 9-30. Yoon, Y.G. Next, 100 μL of each diluted culture was plated separately onto selective LB agar plates supplemented with chloramphenicol (15 μg mL, Statistical analyses were performed using Microsoft Excel spreadsheet software. 2008. Bierne, H.; Michel, B. ; Mikkelson, K.L. Slattery, S.S.; Diamond, A.; Wang, H.; Therrien, J.A. Many potential organisms are under investigation for desirable properties useful for biotechnology applications. Muylaert, K., and K. Sabbe. This information is preliminary or provisional and is subject to revision. Exploring Si Uptake Mechanism in Thalassiosira pseudonana through CRISPR/Cas9 Gene Editing. Estuaries 20(2): 416-429. Fast gapped-read alignment with Bowtie 2. Lake Michigan Field Station, 1431 Beach St., Muskegon, MI 49441-1098 (231) 759-7824 Noskov, V.N. Belshaw, N.; Grouneva, I.; Aram, L.; Gal, A.; Hopes, A.; Mock, T. Efficient CRISPR/Cas-mediated homologous recombination in the model diatom, Görlich, S.; Pawolski, D.; Zlotnikov, I.; Kröger, N. Control of biosilica morphology and mechanical performance by the conserved diatom gene, Schober, A.F. ; Lartigue, C.; Gibson, D.G. 1981. All authors have read and agreed to the published version of the manuscript. Swale. ; Redding, K.E. ; Venter, J.C.; Merryman, C. Chemical synthesis of the mouse mitochondrial genome. Assembly of large, high G+C bacterial DNA fragments in yeast. The genome of the diatom, Oudot-Le Secq, M.P. Parslow. Hasle, G.R. There is little or no evidence to support that Thalassiosira pseudonana has significant environmental impacts in the Great Lakes. Growth response of Thalassiosira pseudonana clone 3H to illumination temperature and nitrogen source. ; Zamani, M.; Matysiakiewicz, O.; Dan, K.N. 1987. Blinn, D.W., M. Hurley, and L. Brokaw. Bigger, B.W. The results draw an overall picture of the changes in Thalassiosira pseudonanaat individual cell and population levels due to differences in temperature and silicon availability. These can often be mistaken for Areola. Murphy, R.R.L. Ecology of freshwater diatoms from the central region of Portugal. 1976. ; Mayfield, S.P. About the Thalassiosira pseudonana genome. Names and dates are hyperlinked to their relevant specimen records. Journal of Phycology 23: 1-9. ; Green, B.R. ; Gibson, D.G. 1976. McQuoid, M.R. Harris, A.S.D., L.K. O’Neill, B.M. Several species are frequently confused with T. pseudonana, and two of these, T. guillar- During colony formation, Thalassiosira release chitin filaments through strutted processes known as fultoportulae. Kline. ; Glé, C.; Hartmann, A.C.; Hildebrand, M.; Gerwick, W.H. ; et al. We use cookies on our website to ensure you get the best experience. ; validation, R.R.C., S.L.B., A.S., D.J.G., S.H., G.B.G., D.R.E., and B.J.K. They can be identified by their characteristic sha… The silica balance in the world ocean: A reestimate. 1983. 1987). GLERL 4840 S. State Rd., Ann Arbor, MI 48108-9719 (734) 741-2235 ; Brunson, J.K.; Valas, R.E. Thompson, and P.J. 1996. ; Suzuki, Y.; Andrews-Pfannkoch, C.; et al. ; Hutchison III, C.A. ; Young, L.; Chuang, R.-Y. The effect of saline seeps and restricted light on the seasonal dynamics of phyto plankton communities within a southwestern USA desert canyon stream. The silica morphology is affected both by temperature and Si abundance. Fatty acid and lipid composition of 10 species of microalgae used in mariculture. Burkholder, M.L. Cochrane, R.R. and Lange, C.R. Marine Ecology Progress Series 109(1): 83-94. Karas, B.J. Busch. ; Venter, J.C.; et al. 2. Cell Structure and Metabolism. Gidrobiologicheskii Zhurnal 17(1): 42-44. Production and dissolution of biogenic silica in the ocean: Revised global estimates, comparison with regional data and relationship to biogenic sedimentation. Poulsen, N.; Chesley, P.M.; Kröger, N. Molecular genetic manipulation of the diatom, Hopes, A.; Nekrasov, V.; Kamoun, S.; Mock, T. Editing of the urease gene by CRISPR-Cas in the diatom. 1994. ; Lin, Y.-C.; Dupont, C.L. An obligate requirement for selenium is demonstrated in axenic culture of the coastal marine diatom Thalassiosira pseudonana (clone 3H) (Hust.) Nichols, G.I. Diatoms are unicellular, eukaryotic, phytoplankton that display a unique evolutionary history and provide major ecological contributions in marine environments. Brand, L.E., L.S. (in Spanish). Gil. Itaya, M.; Fujita, K.; Kuroki, A.; Tsuge, K. Bottom-up genome assembly using the. Harrison. Organelle studies and proteome analyses of mitochondria and plastids fractions from the diatom. Berland, M. Breret, C. Bechemin, R. Poletti, and A. Rinaldi. The statements, opinions and data contained in the journal, © 1996-2020 MDPI (Basel, Switzerland) unless otherwise stated. 1990. Archiv für Hydrobiologie Supplement 112: 113-122. Phycologia 17(3): 263-292. 1996. ; et al. The list of references for all nonindigenous occurrences of Thalassiosira pseudonana are found here. 2006. Chen, C.Y., and E.G. ; Hamadache, S.; Davis, J.G. Wang. Karas, B.J. Godiska, R.; Patterson, M.; Schoenfeld, T.; Mead, D.A. Efficient cloning and engineering of entire mitochondrial genomes in. Comparison of biosilica morphology. Biotechnology and Bioengineering XVIII: 1125-1144. The valve face is often striated radially and hexagonal to polygonal areolae are often apparent in the central region (Belcher and Swale 1977, 1986, Harris et al. Here, we applied the same approach to copy the mitochondrial genome of a related alga. Trentacoste, E.M.; Shrestha, R.P. To that end, we have previously demonstrated that the mitochondrial genome of microalgae Phaeodactylum tricornutum can be cloned and engineered in Saccharomyces cerevisiae and Escherichia coli. 2006, Mallin et al. Organelles are tiny biological machines that work inside of living cells. Many of the over 100 extant diatom species in the cosmopolitan genus Thalassiosira are difficult to distinguish in mixed populations using light microscopy. Prater (eds.) Most species are cosmopolitan, or able to exist in a variety of marine environments around the world. ; Lin, Y.-C.; Stam, J.; Yonemoto, I.T. 1995, Hasle 1976, Lange et al. ; Brumwell, S.L. ; Noskov, V.N. Diatom Research 5(1): 141-154. ; Wang, J.; Tholl, S.Q. Armbrust, E.V., and H.M. Galindo. Sabater, S., and R. Klee. Selenium: an essential element for growth of the coastal marine diatom Thalassiosira pseudonana (Bacillariophyceae). British Phycological Journal 12(3): 291-296. The diatom genus Thalassiosira (Bacillariophyta) in the estuaries of the Schelde (Belgium/The Netherlands) and the Elbe (Germany). Tréguer, P.; Nelson, D.M. ; Janakirama, P.; Edgell, D.R. Planktonic centric diatoms from the Sandusky River, Ohio, USA. Marine Ecology Progress Series 289: 151-163. In general, the rate of reproduction increases with increasing temperature. The silica morphology is affected both by temperature and Si abundance. ; Fink, G.R. ; Rao, S.; Prestidge, C.A. ; Diner, R.E. 1981, McQuoid 2005). 1974. Assembly of eukaryotic algal chromosomes in yeast. It has a dormant stage that is most likely a physiological resting cell (Armbrust et al. Here, we show that the same approach can be used to clone mitochondrial genomes of another microalga, Thalassiosira pseudonana. 1983, Lowe and Busch 1975, Muylaert and Sabbe 1996, Sabater and Klee 1990). ; Liao, A.-Y. ; Jablanovic, J.; Sun, L.; Ma, L.; Goldgof, G.M. Nutrients limiting the algal growth potential (AGP) in the Po River plume and an adjacent area, northwest Adriatic Sea: enrichment bioassays with the test algae Nitzschia closterium and Thalassiosira pseudonana. Leach, J.T. ; et al. Fulfilling iron requirements of a coastal diatom under different temperatures and irradiances. ; Huang, T.; Cochrane, R.R. Cryptogami Algologie 22(1): 109-126. Realized: Thalassiosira pseudonana was found to be useful for mariculture because it has a high fatty-acid composition (Volkman et al. ; Berges, J.A. ; Sergijenko, A.; Coutelle, C. Trial and error: How the unclonable human mitochondrial genome was cloned in yeast. ; Chuang, R.-Y. 1976. Observations on centric diatoms of the River Ebro, Spain: phytoplankton, with special interest on some small Cyclotella. Biomineralizaton is a growing field that is using diatoms to accelerate silica formation and form macromolecular assemblies that might act as structure-directing templates (Sumper and Brunner 2008). Complex repeat structures and novel features in the mitochondrial genomes of the diatoms, Oudot-Le Secq, M.P. The frustules are relatively lightly silicified. Ryther. Note: Check federal, state/provincial, and local regulations for the most up-to-date information. Please let us know what you think of our products and services. Yoon, Y.G. When replication forks stop. Valves are round, flat, with short mantles. First, the mitochondrial genomes will need to be engineered with mitochondria-specific selectable markers. Having evolved 91.5 million years ago during the Upper Turonian period , analyses of th… Direct transfer of whole genomes from bacteria to yeast. Thompson, P.A., P.J. Lee. ; writing—original draft preparation, R.R.C. Maestrini, S.Y., B.R. 1973, Maestrini et al. ; Martinez, D.; Putnam, N.H.; Zhou, S.; Allen, A.E. 1984. Hegseth, E.N., and E. Sakshaug. Their effects on the growth of the marine diatoms, Thalassiosira pseudonana, Chaetoceros gracilis, and Phaeodactylum tricornutum, were determined in laboratory cultures. Armbrust, E.V. Thalassiosira pseudonana can range in diameter from 2.5–15 µm (Belcher and Swale 1977, 1986, Harris et al. Help us to further improve by taking part in this short 5 minute survey, Metformin Ameliorates Lipopolysaccharide-Induced Depressive-Like Behaviors and Abnormal Glutamatergic Transmission, Evidence of Modular Responsiveness of Osteoblast-Like Cells Exposed to Hydroxyapatite-Containing Magnetic Nanostructures, Exploring and Designing Novel Microbes for Biotechnology, http://github.com/sprouffske/growthcurver, https://www.mdpi.com/2079-7737/9/11/358/s1, http://creativecommons.org/licenses/by/4.0/. 1997. Physical There are no known physical control methods for this species. Carlton, and C.L. A combined phylogenetic analysis of two chloroplast (psbC and rbcL) and two nuclear (SSU and partial LSU rDNA) genes strongly and unambiguously resolved the phylogenetic position of T. pseudonana as sister to a clade of marine and freshwater species in the genus Cyclotella (Figure 1).This clade includes C. … The BLAST search yielded no hits. Acta Botanica Hungarica 30(3-4): 277-288. Enhanced genetic tools for engineering multigene traits into green algae. 1982. ; Van Bennekom, A.J. ; methodology, R.R.C., S.L.B., A.S., D.J.G., S.H., G.B.G., D.R.E., and B.J.K. ; et al. Growth of vitamin B12-limited cultures: Thalassiosira pseudonana, Monochrysis lutheri, and Isochrysis galbana. Raman, A.V., and K.P. ; Hildebrand, M. Characterization of a new protein family associated with the silica deposition vesicle membrane enables genetic manipulation of diatom silica. Jeffery, P.D. T.pseudonana grew exponentially until day 4 under Control conditions with a growth rate of 1.06 (±0.14) d −1, followed by stationary growth until the end of the experiment (day 7; Fig. ; Bechner, M.; et al. Meave del Castillo. ; Lefebvre, S.C.; McQuaid, J.; Phillips, A.P.R. In the following article an electron/ion microscopy study will be presented which investigates the uptake of silver nanoparticles (AgNPs) by the marine diatom Thalassiosira pseudonana, a primary producer aquatic species.This organism has a characteristic silica exoskeleton that may represent a barrier for the uptake of some chemical pollutants, including nanoparticles (NPs), …
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